JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCBP3_chr21_45638725_45947450	0/0	t0022	1167	1	1	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0023	1167	1	1	0	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0024	1167	1	0	0	0	0	1	copy fasta	PCBP3	chr21	45638725	45947450
PCBP3_chr21_45638725_45947450	0/0	t0025	1167	1	0	1	0	0	0	copy fasta	PCBP3	chr21	45638725	45947450
PCBP4_chr3_51952458_51972454	1/1	t0001	945	285	73	53	107	8	42	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	t0002	945	11	6	2	0	1	2	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	t0003	945	9	0	0	9	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	t0004	945	1	0	0	1	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	t0005	945	1	0	1	0	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	t0006	945	1	0	0	0	1	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	t0007	945	1	0	0	1	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	t0008	945	1	1	0	0	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	t0009	945	1	1	0	0	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCBP4_chr3_51952458_51972454	0/0	t0010	945	1	1	0	0	0	0	copy fasta	PCBP4	chr3	51952458	51972454
PCCA_chr13_100084093_100535435	1/1	t0001	298	160	45	40	40	6	27	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	t0002	294	6	6	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	t0003	299	6	6	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	t0004	294	1	1	0	0	0	0	copy fasta	PCCA	chr13	100084093	100535435
PCCA_chr13_100084093_100535435	0/0	t0005	298	1	0	0	0	0	1	copy fasta	PCCA	chr13	100084093	100535435
PCCB_chr3_136245340_136335169	1/1	t0001	180	297	85	58	106	10	36	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	t0002	180	2	2	0	0	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCCB_chr3_136245340_136335169	0/0	t0003	180	1	1	0	0	0	0	copy fasta	PCCB	chr3	136245340	136335169
PCDH10_chr4_133144294_133199700	0/1	t0001	5378	119	7	45	50	2	14	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0002	5375	37	0	7	30	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0003	5397	30	2	2	25	1	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	1/0	t0004	5388	29	5	0	23	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0005	5383	13	12	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0006	5397	11	0	0	11	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0007	5397	8	7	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0008	5391	8	2	3	0	2	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0009	5378	7	0	3	1	1	2	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0010	5395	7	3	0	2	0	2	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0011	5406	6	5	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0012	5389	6	1	2	0	1	2	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0013	5391	5	1	0	4	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0014	5396	5	3	1	0	1	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0015	5398	4	4	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0016	5399	3	0	3	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0017	5388	3	0	1	0	0	2	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0018	5379	3	2	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0019	5387	3	3	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0020	5389	2	0	1	0	0	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0021	5375	2	0	0	2	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0022	5394	2	0	0	2	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0023	5385	2	0	0	2	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0024	5397	2	0	0	1	1	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0025	5392	2	2	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0026	5395	2	0	1	0	0	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0027	5390	2	2	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0028	5404	2	2	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700