JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDH10_chr4_133144294_133199700	0/0	t0029	5394	2	2	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0030	5394	2	2	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0031	5393	2	0	0	2	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0032	5391	2	1	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0033	5378	2	0	0	2	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0034	5389	2	2	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0035	5397	2	0	0	2	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0036	5388	2	2	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0037	5397	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0038	5383	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0039	5395	1	0	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0040	5389	1	0	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0041	5397	1	0	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0042	5375	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0043	5385	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0044	5378	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0045	5378	1	0	0	0	0	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0046	5378	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0047	5378	1	0	0	0	0	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0048	5388	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0049	5398	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0050	5397	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0051	5395	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0052	5397	1	0	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0053	5395	1	0	0	0	1	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0054	5395	1	0	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0055	5408	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0056	5403	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0057	5403	1	0	1	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0058	5399	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0059	5399	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0060	5399	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0061	5399	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0062	5397	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0063	5396	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0064	5393	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0065	5394	1	0	0	0	0	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0066	5391	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0067	5390	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0068	5378	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0069	5378	1	0	0	1	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0070	5390	1	0	0	0	0	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0071	5388	1	0	0	0	0	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0072	5389	1	0	0	0	0	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0073	5397	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0074	5396	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0075	5378	1	0	0	0	0	1	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0076	5398	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH10_chr4_133144294_133199700	0/0	t0077	5383	1	1	0	0	0	0	copy fasta	PCDH10	chr4	133144294	133199700
PCDH11X_chrX_91774375_92628230	0/0	t0001	4979	46	5	6	26	1	8	copy fasta	PCDH11X	chrX	91774375	92628230