JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDH11X_chrX_91774375_92628230	0/0	t0002	4987	29	11	8	6	0	4	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0003	4979	20	1	4	14	0	1	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0004	4980	8	0	4	1	2	1	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0005	4985	5	5	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0006	4981	5	5	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0007	4985	4	1	0	3	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0008	4983	4	4	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0009	4993	4	0	0	4	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0010	4982	4	1	1	0	1	1	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0011	4985	2	2	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0012	4983	2	2	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0013	4979	2	0	0	2	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0014	4979	2	2	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0015	4979	1	0	1	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0016	4988	1	0	0	1	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0017	4987	1	0	0	0	0	1	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0018	4988	1	0	0	0	0	1	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0019	4981	1	0	0	1	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0020	4986	1	0	1	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0021	4991	1	1	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0022	4979	1	1	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0023	4985	1	1	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0024	4983	1	1	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0025	4983	1	1	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0026	4979	1	0	0	0	1	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0027	4980	1	0	0	1	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0028	4980	1	0	0	0	0	1	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0029	4989	1	1	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0030	4980	1	0	0	1	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11X_chrX_91774375_92628230	0/0	t0031	4987	1	1	0	0	0	0	copy fasta	PCDH11X	chrX	91774375	92628230
PCDH11Y_chrY_4995296_5747224	0/0	t0001	4804	87	16	13	47	3	8	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	t0002	4804	15	0	7	0	2	6	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	t0003	4804	3	0	0	3	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	t0004	4804	3	0	0	3	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	t0005	4804	2	0	0	2	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	t0006	4804	2	0	0	2	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	t0007	4805	1	0	0	0	0	1	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	t0008	4804	1	0	0	1	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH11Y_chrY_4995296_5747224	0/0	t0009	4804	1	1	0	0	0	0	copy fasta	PCDH11Y	chrY	4995296	5747224
PCDH12_chr5_141938581_141963202	0/1	t0001	2152	278	66	40	129	7	35	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	1/0	t0002	2152	96	16	32	28	10	9	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0003	2152	15	3	2	9	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0004	2152	7	7	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0005	2152	4	4	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0006	2152	1	0	0	0	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0007	2152	1	0	0	1	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0008	2152	1	0	0	0	1	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0009	2152	1	0	0	1	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0010	2152	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0011	2152	1	0	0	1	0	0	copy fasta	PCDH12	chr5	141938581	141963202