Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASTE1_chr3_131008875_131031825	0/0	t0003	648	2	0	0	2	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	t0004	648	2	2	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	t0005	648	1	0	0	0	1	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	t0006	648	1	1	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	t0007	648	1	1	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	t0008	648	1	1	0	0	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	t0009	648	1	0	0	1	0	0	copy fasta	ASTE1	chr3	131008875	131031825
ASTE1_chr3_131008875_131031825	0/0	t0010	648	1	0	0	0	0	1	copy fasta	ASTE1	chr3	131008875	131031825
ASTL_chr2_96117818_96143502	1/1	t0001	1099	343	84	66	145	9	37	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0002	1099	28	0	6	22	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0003	1099	11	5	2	3	0	1	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0004	1099	4	0	0	4	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0005	1099	3	3	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0006	1099	2	0	0	2	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0007	1099	1	1	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0008	1099	1	0	0	1	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0009	1099	1	1	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0010	1099	1	0	0	1	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	t0011	1099	1	0	0	0	1	0	copy fasta	ASTL	chr2	96117818	96143502
ASTN1_chr1_176856067_177169712	0/0	t0001	3254	29	14	6	7	1	1	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0002	3254	24	18	1	2	2	1	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	1/0	t0003	3254	16	0	8	4	1	2	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0004	3254	8	7	1	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0005	3254	5	5	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0006	3254	5	1	1	2	1	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0007	3254	5	5	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/1	t0008	3254	4	0	1	0	0	2	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0009	3254	3	3	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0010	3254	2	0	0	0	0	2	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0011	3254	2	2	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0012	3254	1	0	0	0	1	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0013	3254	1	0	1	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0014	3254	1	1	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0015	3254	1	1	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0016	3254	1	1	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0017	3254	1	0	0	1	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0018	3254	1	0	1	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0019	3254	1	1	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	t0020	3254	1	1	0	0	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN2_chr9_116418112_117420057	0/0	t0001	2860	25	13	6	3	2	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	1/0	t0002	2859	16	6	6	1	0	2	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0003	2860	12	1	3	4	2	2	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/1	t0004	2860	12	2	5	2	2	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0005	2860	11	8	3	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0006	2860	7	6	1	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0007	2853	4	4	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0008	2860	4	1	0	1	0	2	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0009	2860	2	1	1	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0010	2860	2	0	1	1	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0011	2869	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057