JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDH12_chr5_141938581_141963202	0/0	t0012	2152	1	1	0	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0013	2152	1	0	0	1	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0014	2152	1	0	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0015	2152	1	0	0	0	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0016	2152	1	0	1	0	0	0	copy fasta	PCDH12	chr5	141938581	141963202
PCDH12_chr5_141938581_141963202	0/0	t0017	2152	1	0	0	0	0	1	copy fasta	PCDH12	chr5	141938581	141963202
PCDH15_chr10_53797771_54806231	1/1	t0001	4144	31	14	11	0	0	4	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0002	4148	10	1	3	3	0	3	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0003	4148	9	4	2	1	0	2	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0004	4152	9	8	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0005	4148	7	2	3	0	0	2	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0006	4148	4	1	0	2	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0007	4148	3	2	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0008	4144	3	3	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0009	4152	3	3	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0010	4152	2	2	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0011	4143	2	2	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0012	4148	2	2	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0013	4148	2	2	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0014	4144	2	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0015	4144	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0016	4148	1	0	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0017	4148	1	0	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0018	4148	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0019	4148	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0020	4148	1	0	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0021	4148	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0022	4148	1	0	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0023	4148	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0024	4144	1	0	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0025	4148	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0026	4148	1	0	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	t0027	4152	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53816099_54806231	1/1	t0001	1095	73	31	21	6	0	13	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	t0002	1095	9	8	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	t0003	1075	3	2	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	t0004	1095	2	2	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	t0005	1095	2	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	t0006	1095	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	t0007	1095	1	0	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	t0008	1095	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	t0009	1095	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	t0010	1095	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH17_chr13_57626744_57734311	0/0	t0001	4818	55	6	15	24	2	8	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0002	4821	53	23	7	19	2	2	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0003	4820	33	1	19	7	2	4	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0004	4819	20	4	5	9	1	1	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0005	4820	17	13	1	2	0	1	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/1	t0006	4819	16	2	5	5	1	2	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0007	4819	13	0	0	11	1	1	copy fasta	PCDH17	chr13	57626744	57734311