JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDH17_chr13_57626744_57734311	0/0	t0008	4821	12	1	3	7	1	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0009	4822	10	0	5	2	1	2	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0010	4819	8	2	2	3	0	1	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0011	4819	7	0	0	7	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0012	4820	5	0	0	5	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0013	4820	4	1	0	1	0	2	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0014	4819	4	0	0	4	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0015	4818	3	3	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0016	4818	3	0	0	3	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0017	4820	2	0	0	2	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0018	4821	2	2	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0019	4820	2	0	0	2	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0020	4822	2	0	2	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0021	4820	2	0	1	0	0	1	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0022	4820	2	1	1	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0023	4819	2	0	0	2	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0024	4819	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0025	4818	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0026	4820	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0027	4821	1	0	0	0	1	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0028	4819	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0029	4819	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0030	4822	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0031	4821	1	0	0	0	0	1	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	1/0	t0032	4821	1	0	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0033	4822	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0034	4820	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0035	4821	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0036	4819	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0037	4821	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0038	4821	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0039	4822	1	0	1	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0040	4822	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0041	4821	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0042	4819	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0043	4822	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0044	4819	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0045	4819	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0046	4822	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0047	4820	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0048	4819	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0049	4818	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0050	4820	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0051	4821	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0052	4819	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0053	4818	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0054	4820	1	0	1	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0055	4819	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	t0056	4819	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH18_chr4_137513918_137537494	1/1	t0001	2518	170	16	29	89	11	23	copy fasta	PCDH18	chr4	137513918	137537494