JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDH18_chr4_137513918_137537494	0/0	t0002	2518	85	0	15	59	3	8	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0003	2518	72	26	20	17	3	6	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0004	2518	17	15	1	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0005	2518	8	7	1	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0006	2519	4	3	1	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0007	2518	4	2	0	2	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0008	2519	4	1	3	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0009	2518	3	3	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0010	2518	3	0	0	2	0	1	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0011	2519	3	0	0	0	0	3	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0012	2519	3	0	0	0	0	3	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0013	2518	3	3	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0014	2519	3	0	0	3	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0015	2518	3	3	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0016	2518	2	2	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0017	2518	2	2	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0018	2518	2	0	0	0	0	2	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0019	2518	2	1	1	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0020	2518	2	0	0	2	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0021	2518	1	1	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0022	2518	1	0	0	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0023	2518	1	0	0	0	1	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0024	2519	1	1	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0025	2518	1	0	0	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0026	2519	1	1	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0027	2518	1	0	0	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0028	2518	1	1	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0029	2519	1	1	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0030	2518	1	0	1	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	t0031	2519	1	1	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH19_chrX_100286644_100415273	0/0	t0001	6310	83	3	15	51	2	12	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	1/0	t0002	6310	39	32	3	1	1	1	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0003	6310	30	3	8	17	0	2	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0004	6310	18	0	10	4	2	2	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0005	6310	12	1	8	0	0	3	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/1	t0006	6319	11	0	5	0	4	1	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0007	6301	10	5	2	3	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0008	6310	7	7	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0009	6301	6	6	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0010	6310	5	0	0	5	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0011	6307	4	3	1	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0012	6310	4	0	0	4	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0013	6310	3	0	0	0	0	3	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0014	6311	3	0	0	2	0	1	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0015	6301	2	2	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0016	6301	2	2	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0017	6310	2	2	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0018	6310	2	2	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0019	6310	2	0	0	2	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0020	6310	2	0	0	2	0	0	copy fasta	PCDH19	chrX	100286644	100415273