JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDH19_chrX_100286644_100415273	0/0	t0021	6310	2	0	0	2	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0022	6299	2	0	0	0	0	2	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0023	6313	2	0	0	2	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0024	6292	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0025	6301	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0026	6301	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0027	6301	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0028	6301	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0029	6301	1	0	1	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0030	6310	1	0	0	0	0	1	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0031	6307	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0032	6310	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0033	6311	1	0	0	0	0	1	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0034	6303	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0035	6310	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0036	6311	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0037	6311	1	0	1	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0038	6310	1	0	0	0	0	1	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0039	6310	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0040	6310	1	0	1	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0041	6310	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0042	6310	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0043	6308	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0044	6309	1	0	1	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0045	6310	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0046	6311	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0047	6310	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0048	6311	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0049	6312	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0050	6310	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	t0051	6310	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH1_chr5_141848090_141883410	0/1	t0001	1101	346	67	70	151	15	42	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	t0002	1101	18	15	2	0	1	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	1/0	t0003	1101	8	7	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	t0004	1101	3	2	1	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	t0005	1101	2	1	0	0	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	t0006	1101	2	2	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	t0007	1101	1	0	0	0	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	t0008	1101	1	0	0	1	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	t0009	1101	1	0	0	1	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	t0010	1101	1	0	0	1	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	t0011	1101	1	0	1	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH20_chr13_61404685_61420849	0/0	t0001	2251	135	16	30	71	6	12	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0002	2251	101	22	18	39	5	17	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/1	t0003	2252	73	31	13	18	6	4	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0004	2251	31	5	0	14	1	11	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0005	2251	28	0	2	26	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0006	2251	14	0	0	14	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0007	2252	7	0	0	7	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0008	2251	7	0	0	7	0	0	copy fasta	PCDH20	chr13	61404685	61420849