JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDH20_chr13_61404685_61420849	0/0	t0009	2251	6	0	6	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0010	2252	6	6	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0011	2251	5	2	2	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0012	2251	4	0	0	4	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	1/0	t0013	2250	4	3	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0014	2250	3	0	1	1	0	1	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0015	2252	3	0	0	3	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0016	2251	3	0	0	3	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0017	2251	2	2	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0018	2250	2	0	0	2	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0019	2251	2	2	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0020	2251	2	0	1	0	0	1	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0021	2250	2	1	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0022	2251	2	2	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0023	2251	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0024	2252	1	1	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0025	2251	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0026	2252	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0027	2252	1	0	1	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0028	2250	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0029	2251	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0030	2251	1	1	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0031	2252	1	1	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0032	2251	1	1	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0033	2251	1	0	1	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0034	2251	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0035	2250	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0036	2250	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0037	2251	1	0	1	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	t0038	2251	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH7_chr4_30715369_31151800	0/0	t0001	4998	45	18	3	19	0	5	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0002	5006	41	6	8	17	3	7	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0003	5003	16	0	2	14	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0004	4999	15	1	0	13	0	1	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0005	5006	12	0	0	8	0	4	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0006	4999	10	1	3	6	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0007	5001	7	7	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0008	5003	4	0	0	4	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0009	5000	4	0	2	0	0	2	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0010	4998	4	4	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0011	5014	4	0	3	0	0	1	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0012	4999	3	3	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0013	5006	3	0	3	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0014	4998	2	0	0	2	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0015	4999	2	0	0	2	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0016	4999	2	0	0	2	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0017	4998	2	0	2	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0018	4999	2	0	0	1	0	1	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0019	4999	2	2	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0020	5002	2	0	0	2	0	0	copy fasta	PCDH7	chr4	30715369	31151800