JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDH7_chr4_30715369_31151800	0/0	t0021	5006	2	2	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0022	5006	2	2	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0023	4999	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0024	4999	1	0	0	0	0	1	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0025	5007	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0026	4999	1	0	0	0	0	1	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0027	4999	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0028	4998	1	0	0	0	0	1	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0029	4998	1	0	0	0	0	1	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0030	4999	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0031	4999	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0032	5003	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0033	5000	1	0	0	0	1	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0034	5002	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0035	5006	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0036	5006	1	0	1	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0037	5002	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0038	4998	1	0	0	0	0	1	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0039	5006	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0040	5003	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0041	4998	1	0	1	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0042	4999	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0043	4998	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0044	5006	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0045	4999	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0046	4998	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0047	5006	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0048	5006	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0049	5006	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	t0050	5003	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH8_chr13_52837889_52853640	1/1	t0001	1876	404	77	75	188	17	45	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	t0002	1876	8	7	1	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	t0003	1876	7	4	3	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	t0004	1876	4	3	1	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	t0005	1876	1	0	0	0	1	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	t0006	1876	1	0	0	0	0	1	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	t0007	1876	1	0	0	1	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	t0008	1876	1	1	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	t0009	1876	1	0	0	1	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH9_chr13_66297834_67235336	0/0	t0001	2515	23	11	4	5	0	3	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0002	2515	14	6	2	2	0	4	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0003	2516	13	6	6	0	0	1	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0004	2516	7	2	2	3	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0005	2514	5	4	1	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0006	2512	3	3	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0007	2515	2	2	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0008	2515	2	1	1	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0009	2512	1	0	1	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0010	2515	1	0	0	0	1	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0011	2514	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336