JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDH9_chr13_66297834_67235336	0/0	t0012	2514	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0013	2514	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0014	2515	1	0	0	0	1	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0015	2516	1	0	1	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0016	2515	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0017	2516	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0018	2516	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	t0019	2514	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDHA10_chr5_140850897_141017347	1/1	t0001	2563	199	48	42	72	8	27	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0002	2563	17	3	1	11	0	2	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0003	2559	10	10	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0004	2563	8	0	0	8	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0005	2563	5	5	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0006	2563	4	2	2	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0007	2563	4	4	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0008	2563	3	0	3	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0009	2563	2	2	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0010	2563	2	0	0	2	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0011	2563	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0012	2563	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0013	2563	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0014	2563	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0015	2563	1	0	0	0	0	1	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	t0016	2563	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA11_chr5_140863957_141017347	1/1	t0001	2558	198	51	40	68	8	29	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0002	2558	17	3	1	11	0	2	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0003	2554	10	10	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0004	2558	9	0	0	9	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0005	2558	5	5	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0006	2558	4	2	2	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0007	2558	4	4	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0008	2558	3	0	3	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0009	2558	2	2	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0010	2558	2	0	0	2	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0011	2558	1	0	0	1	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0012	2558	1	0	0	1	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0013	2558	1	0	0	1	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0014	2558	1	0	0	1	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0015	2558	1	0	0	0	0	1	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	t0016	2558	1	1	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA12_chr5_140870308_141017347	1/1	t0001	2576	197	52	39	70	7	27	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0002	2576	17	3	1	11	0	2	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0003	2572	10	10	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0004	2576	9	0	0	9	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0005	2576	5	5	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0006	2576	4	2	2	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0007	2576	4	4	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0008	2576	3	0	3	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0009	2576	2	0	0	2	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0010	2576	1	0	0	1	0	0	copy fasta	PCDHA12	chr5	140870308	141017347