JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHA12_chr5_140870308_141017347	0/0	t0011	2576	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0012	2576	1	0	0	1	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0013	2576	1	0	0	1	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0014	2576	1	0	0	1	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0015	2576	1	0	0	0	0	1	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0016	2576	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0017	2576	1	0	0	0	1	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	t0018	2576	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA13_chr5_140877124_141017347	1/1	t0001	2556	199	52	40	70	8	27	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0002	2556	16	3	1	10	0	2	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0003	2552	11	11	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0004	2556	9	0	0	9	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0005	2556	5	5	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0006	2556	5	5	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0007	2556	4	2	2	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0008	2556	3	0	3	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0009	2556	2	2	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0010	2556	2	0	0	2	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0011	2556	1	0	0	1	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0012	2556	1	0	0	1	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0013	2556	1	0	0	1	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	t0014	2556	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA1_chr5_140781140_141017347	1/1	t0001	2562	153	49	32	45	6	19	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0002	2562	10	3	0	7	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0003	2558	10	10	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0004	2562	6	0	0	6	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0005	2562	4	2	2	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0006	2562	4	4	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0007	2562	2	2	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0008	2562	2	2	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0009	2562	2	0	0	2	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0010	2562	2	0	2	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0011	2562	2	2	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0012	2562	1	0	0	1	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0013	2562	1	0	0	1	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	t0014	2562	1	0	0	0	0	1	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA2_chr5_140789852_141017347	1/1	t0001	2524	155	49	32	47	6	19	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0002	2524	10	3	0	7	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0003	2520	10	10	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0004	2524	6	0	0	6	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0005	2524	5	5	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0006	2524	4	2	2	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0007	2524	4	4	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0008	2524	2	0	0	2	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0009	2524	2	0	2	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0010	2524	1	0	0	1	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0011	2524	1	0	0	1	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0012	2524	1	1	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	t0013	2524	1	0	0	0	0	1	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0001	2552	97	34	22	26	3	12	copy fasta	PCDHA3	chr5	140796057	141017347