JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHA3_chr5_140796057_141017347	1/1	t0002	2552	61	17	9	21	3	9	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0003	2548	9	9	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0004	2552	7	1	0	6	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0005	2552	6	0	0	6	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0006	2552	5	2	0	1	0	2	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0007	2552	4	2	2	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0008	2552	4	4	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0009	2552	3	3	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0010	2552	2	0	2	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0011	2552	2	0	0	2	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0012	2552	2	2	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0013	2552	1	0	1	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0014	2552	1	1	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0015	2548	1	1	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0016	2552	1	0	0	0	0	1	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0017	2552	1	0	0	1	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	t0018	2552	1	0	0	1	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0001	2531	97	34	22	26	3	12	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	1/1	t0002	2531	66	17	10	25	3	9	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0003	2527	8	8	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0004	2531	7	1	0	6	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0005	2531	6	0	0	6	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0006	2531	5	2	0	1	0	2	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0007	2531	4	4	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0008	2531	4	2	2	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0009	2531	4	4	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0010	2531	2	0	2	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0011	2531	2	0	0	2	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0012	2527	1	1	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0013	2531	1	1	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0014	2527	1	1	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0015	2531	1	0	0	0	0	1	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0016	2531	1	0	0	1	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0017	2531	1	0	0	1	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	t0018	2531	1	1	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0001	2574	91	25	23	29	2	12	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	1/1	t0002	2574	67	17	11	25	3	9	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0003	2574	9	8	0	0	1	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0004	2574	7	1	0	6	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0005	2570	7	7	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0006	2574	6	0	0	6	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0007	2574	3	3	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0008	2574	3	2	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0009	2574	3	0	0	1	0	2	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0010	2574	3	2	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0011	2574	3	3	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0012	2574	2	0	2	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0013	2574	2	2	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0014	2574	2	2	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0015	2574	2	0	0	2	0	0	copy fasta	PCDHA5	chr5	140816613	141017347