JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHA5_chr5_140816613_141017347	0/0	t0016	2574	1	1	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0017	2570	1	1	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0018	2574	1	0	0	0	0	1	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0019	2574	1	0	0	1	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0020	2574	1	0	0	1	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0021	2574	1	1	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0022	2570	1	1	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0023	2574	1	1	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0024	2574	1	0	0	1	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	t0025	2570	1	1	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA6_chr5_140822960_141017347	1/1	t0001	2543	182	53	35	61	8	23	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0002	2543	13	3	0	8	0	2	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0003	2539	11	11	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0004	2543	7	0	0	7	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0005	2543	5	5	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0006	2543	4	2	2	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0007	2543	4	4	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0008	2543	3	0	3	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0009	2543	2	2	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0010	2543	2	0	0	2	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0011	2543	1	0	0	1	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0012	2543	1	0	0	1	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	t0013	2543	1	0	0	0	0	1	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA7_chr5_140829269_141017347	1/1	t0001	2526	188	52	36	65	8	25	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0002	2526	16	3	1	10	0	2	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0003	2522	11	11	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0004	2526	9	0	0	9	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0005	2526	5	5	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0006	2526	4	2	2	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0007	2526	4	4	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0008	2526	3	0	3	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0009	2526	2	2	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0010	2526	2	0	0	2	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0011	2526	1	1	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0012	2526	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0013	2526	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	t0014	2526	1	0	0	0	0	1	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA8_chr5_140836187_141017347	1/1	t0001	2546	195	50	40	68	8	27	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0002	2546	16	2	1	11	0	2	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0003	2542	11	11	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0004	2546	9	0	0	9	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0005	2546	4	2	2	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0006	2546	4	4	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0007	2546	4	4	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0008	2546	3	3	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0009	2546	3	0	3	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0010	2546	2	2	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0011	2546	2	0	0	2	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0012	2546	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0013	2546	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347