Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASTN2_chr9_116418112_117420057	0/0	t0012	2869	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0013	2859	1	0	0	0	0	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0014	2860	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0015	2859	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0016	2860	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	t0017	2859	1	1	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASXL1_chr20_32353331_32444319	1/0	t0001	2427	135	45	34	40	5	10	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/1	t0002	2427	82	13	11	41	5	11	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0003	2427	15	14	1	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0004	2428	14	4	1	5	0	4	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0005	2428	8	2	2	4	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0006	2427	8	0	3	5	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0007	2427	4	3	1	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0008	2427	2	0	0	1	0	1	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0009	2427	2	2	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0010	2427	2	0	1	0	1	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0011	2428	2	2	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0012	2427	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0013	2427	1	0	0	0	1	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0014	2427	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0015	2427	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0016	2427	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0017	2427	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0018	2428	1	0	1	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	t0019	2427	1	0	1	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL2_chr2_25728753_25883487	1/0	t0001	8542	89	26	21	21	6	14	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0002	8540	22	0	7	12	1	2	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0003	8540	8	3	5	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0004	8542	7	0	0	7	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0005	8544	6	6	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0006	8543	6	4	2	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0007	8542	5	2	2	1	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0008	8543	5	0	2	0	0	3	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0009	8540	4	0	3	0	1	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0010	8542	4	3	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0011	8543	4	2	2	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0012	8542	3	1	0	0	0	2	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0013	8540	3	3	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0014	8539	3	0	0	1	0	2	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0015	8543	3	2	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0016	8543	3	3	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0017	8542	3	3	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0018	8544	2	2	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0019	8544	2	0	0	0	0	2	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0020	8540	2	1	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0021	8543	2	1	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0022	8542	2	0	0	0	0	2	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0023	8542	2	0	1	1	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0024	8542	2	2	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0025	8542	2	2	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487