JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHA8_chr5_140836187_141017347	0/0	t0014	2546	1	0	0	1	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0015	2546	1	0	0	1	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	t0016	2546	1	0	0	0	0	1	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA9_chr5_140843382_141017347	1/1	t0001	2525	187	40	41	70	8	26	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0002	2525	17	3	1	11	0	2	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0003	2521	10	10	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0004	2525	8	0	0	8	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0005	2525	4	2	2	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0006	2525	4	3	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0007	2525	3	3	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0008	2525	3	0	3	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0009	2525	3	3	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0010	2525	3	3	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0011	2525	2	2	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0012	2525	2	2	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0013	2525	2	2	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0014	2525	2	0	0	2	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0015	2525	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0016	2521	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0017	2525	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0018	2525	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0019	2525	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	t0020	2525	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHAC1_chr5_140921299_141017347	0/1	t0001	3005	147	32	26	63	5	20	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0002	3005	38	14	10	11	0	3	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	1/0	t0003	3005	26	3	6	7	4	5	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0004	3005	14	1	1	9	0	3	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0005	3001	9	9	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0006	3005	9	0	0	9	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0007	3005	5	5	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0008	3005	4	3	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0009	3005	4	4	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0010	3005	3	2	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0011	3005	2	2	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0012	3005	2	0	0	2	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0013	3005	2	0	2	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0014	3005	2	1	0	1	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0015	3005	1	0	0	1	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0016	3005	1	0	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0017	3001	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0018	3005	1	0	0	1	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0019	3005	1	0	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0020	3005	1	0	0	1	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0021	3005	1	0	0	1	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0022	3005	1	0	0	0	0	1	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0023	3005	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0024	3005	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0025	3001	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0026	3005	1	0	0	0	1	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	t0027	3005	1	0	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347