JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHAC2_chr5_140961476_141017347	1/1	t0001	2702	248	52	50	100	12	32	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0002	2702	18	3	1	13	0	1	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0003	2698	11	11	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0004	2702	9	0	0	9	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0005	2702	6	3	3	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0006	2702	5	5	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0007	2702	4	4	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0008	2702	3	0	0	3	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0009	2702	3	0	3	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0010	2702	3	3	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0011	2702	2	2	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0012	2702	2	2	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0013	2702	2	0	0	0	2	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0014	2702	1	1	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0015	2702	1	0	0	1	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0016	2702	1	1	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0017	2702	1	0	0	1	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0018	2702	1	0	0	1	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0019	2702	1	1	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0020	2702	1	0	1	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	t0021	2702	1	0	0	0	0	1	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHB10_chr5_141187353_141200647	0/1	t0001	893	282	61	43	150	10	17	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	1/0	t0002	893	158	30	35	64	8	20	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	t0003	893	7	3	2	2	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	t0004	893	2	0	2	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	t0005	893	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	t0006	893	1	0	0	0	0	1	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	t0007	893	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	t0008	893	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	t0009	893	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	t0010	693	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	t0011	693	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB11_chr5_141194627_141208779	1/0	t0001	1760	99	16	20	51	2	9	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0002	1761	75	0	13	57	0	5	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/1	t0003	1760	53	5	12	18	6	11	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0004	1761	38	0	6	29	0	3	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0005	1760	27	5	3	15	1	3	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0006	1756	23	3	5	10	3	2	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0007	1760	11	2	5	3	1	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0008	1761	10	0	3	6	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0009	1759	10	5	5	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0010	1759	6	6	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0011	1756	6	3	2	0	1	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0012	1760	6	5	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0013	1762	5	0	0	5	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0014	1761	4	4	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0015	1762	4	0	0	2	1	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0016	1761	3	0	0	1	2	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0017	1759	3	1	1	0	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0018	1760	3	3	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779