JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHB11_chr5_141194627_141208779	0/0	t0019	1762	3	1	1	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0020	1761	2	2	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0021	1759	2	2	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0022	1759	2	2	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0023	1755	2	2	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0024	1755	2	2	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0025	1759	2	1	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0026	1756	2	0	1	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0027	1761	2	1	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0028	1761	2	2	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0029	1759	2	2	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0030	1757	2	0	2	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0031	1761	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0032	1761	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0033	1762	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0034	1755	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0035	1755	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0036	1755	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0037	1755	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0038	1755	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0039	1758	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0040	1758	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0041	1763	1	0	0	0	1	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0042	1763	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0043	1761	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0044	1761	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0045	1761	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0046	1759	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0047	1759	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0048	1759	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0049	1755	1	0	0	0	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0050	1756	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0051	1756	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0052	1756	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0053	1759	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0054	1764	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0055	1760	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0056	1760	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0057	1760	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0058	1761	1	0	0	0	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0059	1761	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0060	1760	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0061	1761	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0062	1761	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	t0063	1756	1	0	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB12_chr5_141203719_141217571	0/0	t0001	1466	124	1	19	89	4	11	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	t0002	1466	84	21	12	44	2	5	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	1/0	t0003	1466	64	4	23	19	4	13	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	t0004	1466	54	26	13	9	4	2	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/1	t0005	1466	54	9	5	31	2	6	copy fasta	PCDHB12	chr5	141203719	141217571