JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHB14_chr5_141218343_141232759	0/0	t0005	2021	9	7	2	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0006	2021	6	6	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0007	2021	4	4	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0008	2021	3	3	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0009	2021	3	0	0	3	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0010	2021	3	3	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0011	2021	2	0	0	2	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0012	2021	2	0	2	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0013	2021	2	0	0	2	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0014	2021	2	2	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0015	2021	2	2	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0016	2021	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/1	t0017	2021	1	0	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0018	2021	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0019	2021	1	0	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0020	2021	1	0	0	0	0	1	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0021	2021	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0022	2021	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0023	2021	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0024	2021	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0025	2021	1	0	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0026	2021	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	t0027	2021	1	0	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB15_chr5_141240395_141254365	1/1	t0001	1608	344	64	61	173	11	33	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0002	1609	34	11	6	12	2	3	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0003	1608	10	1	7	0	1	1	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0004	1609	4	0	4	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0005	1608	4	4	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0006	1608	3	0	0	3	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0007	1608	3	3	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0008	1609	3	0	0	0	0	3	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0009	1608	2	0	0	2	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0010	1608	2	2	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0011	1608	2	2	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0012	1608	1	0	0	0	0	1	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0013	1608	1	0	0	1	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0014	1608	1	0	1	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0015	1581	1	0	0	0	0	1	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0016	1608	1	0	0	1	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0017	1608	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0018	1609	1	0	1	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0019	1609	1	0	0	1	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0020	1609	1	0	0	1	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0021	1609	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	t0022	1608	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB16_chr5_141177387_141191226	0/0	t0001	1510	169	27	26	100	4	12	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0002	1510	78	22	13	38	2	3	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	1/0	t0003	1510	56	3	17	17	3	15	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/1	t0004	1510	39	2	3	27	2	4	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0005	1509	35	4	11	13	4	3	copy fasta	PCDHB16	chr5	141177387	141191226