JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHB16_chr5_141177387_141191226	0/0	t0006	1509	8	8	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0007	1510	8	0	0	8	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0008	1510	7	1	6	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0009	1509	6	6	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0010	1509	5	0	1	4	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0011	1508	5	5	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0012	1510	5	5	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0013	1510	4	0	0	4	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0014	1509	4	3	1	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0015	1510	4	0	1	0	3	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0016	1510	3	3	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0017	1510	2	2	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0018	1510	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0019	1508	1	0	1	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0020	1509	1	0	1	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0021	1510	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0022	1510	1	0	1	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0023	1510	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0024	1510	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0025	1510	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0026	1509	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0027	1510	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0028	1510	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0029	1509	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0030	1510	1	0	0	0	0	1	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	t0031	1510	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB1_chr5_141046374_141064346	0/0	t0001	5514	77	0	16	47	3	11	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0002	5516	70	19	9	36	2	4	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	1/0	t0003	5517	40	11	10	10	2	6	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/1	t0004	5517	30	1	9	16	1	2	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0005	5517	19	0	1	16	1	1	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0006	5516	15	2	0	11	0	2	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0007	5511	10	2	2	0	2	4	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0008	5515	10	0	0	9	0	1	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0009	5516	9	9	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0010	5517	9	8	1	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0011	5517	8	0	0	7	0	1	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0012	5516	7	0	0	7	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0013	5520	6	0	0	6	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0014	5515	5	5	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0015	5515	5	3	1	1	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0016	5513	5	0	0	5	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0017	5516	5	0	0	5	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0018	5513	4	0	3	0	0	1	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0019	5517	4	2	2	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0020	5516	4	0	3	0	1	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0021	5515	4	1	1	2	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0022	5515	4	4	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0023	5518	3	1	1	0	0	1	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0024	5514	2	0	0	0	0	2	copy fasta	PCDHB1	chr5	141046374	141064346