JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHB1_chr5_141046374_141064346	0/0	t0075	5518	1	0	0	1	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0076	5517	1	1	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0077	5517	1	1	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0078	5517	1	1	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0079	5516	1	1	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0080	5517	1	1	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0081	5515	1	1	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	t0082	5517	1	1	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB2_chr5_141089615_141103703	1/1	t0001	1693	293	65	44	131	11	40	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0002	1692	62	16	15	29	1	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0003	1693	26	0	2	22	1	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0004	1694	18	9	4	3	1	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0005	1690	4	4	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0006	1692	3	0	0	2	0	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0007	1693	3	2	1	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0008	1693	2	2	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0009	177	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0010	1693	1	0	1	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0011	1693	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0012	1693	1	0	1	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0013	1693	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0014	1692	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	t0015	1693	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB3_chr5_141095473_141108827	1/1	t0001	965	188	46	35	77	9	19	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0002	965	106	1	14	70	5	16	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0003	964	49	9	12	25	1	2	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0004	965	27	1	2	22	1	1	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0005	966	16	16	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0006	965	11	11	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0007	967	6	6	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0008	965	5	2	3	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0009	964	3	1	2	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0010	965	2	2	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0011	965	2	0	0	2	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0012	965	2	0	0	0	0	2	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0013	965	2	0	0	2	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0014	965	2	0	0	0	0	2	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0015	966	1	1	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0016	964	1	1	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	t0017	788	1	1	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB4_chr5_141116818_141130623	1/1	t0001	1419	250	66	45	103	9	25	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0002	1419	128	1	20	83	5	19	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0003	1419	32	2	2	24	1	3	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0004	1419	21	21	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0005	1419	4	4	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0006	1419	2	2	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0007	1419	1	0	0	0	1	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0008	1419	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0009	1419	1	0	0	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0010	1419	1	0	0	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623