JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHB4_chr5_141116818_141130623	0/0	t0011	1419	1	0	0	0	0	1	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0012	1419	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	t0013	1419	1	0	1	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB5_chr5_141130206_141143615	1/1	t0001	1023	393	68	69	199	11	44	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	t0002	1023	36	1	6	24	2	3	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	t0003	1023	20	20	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	t0004	1019	8	0	5	0	2	1	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	t0005	1023	6	6	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	t0006	1022	3	3	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	t0007	1023	2	0	0	2	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	t0008	1023	1	0	0	0	1	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	t0009	1023	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB6_chr5_141145057_141158287	1/0	t0001	847	139	21	26	69	5	17	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0002	848	84	0	7	62	4	11	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/1	t0003	847	65	22	9	26	1	6	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0004	848	64	26	18	13	4	3	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0005	848	49	0	3	45	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0006	849	9	0	2	7	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0007	847	8	1	5	0	1	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0008	849	8	1	4	2	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0009	847	5	5	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0010	848	5	2	0	0	1	2	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0011	847	4	4	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0012	848	3	3	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0013	202	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0014	847	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0015	848	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0016	848	2	0	2	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0017	847	1	1	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0018	847	1	0	1	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0019	847	1	0	1	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0020	846	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0021	848	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0022	847	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0023	848	1	1	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0024	848	1	1	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0025	847	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0026	848	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0027	847	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0028	849	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	t0029	848	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB7_chr5_141167644_141181383	1/1	t0001	1359	200	44	38	83	7	26	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	t0002	1359	173	26	30	96	7	14	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	t0003	1359	24	17	5	2	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	t0004	1359	9	0	0	9	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	t0005	1359	3	2	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	t0006	1359	2	2	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	t0007	1359	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	t0008	1359	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	t0009	1359	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383