JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHB7_chr5_141167644_141181383	0/0	t0010	1359	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	t0011	1359	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB8_chr5_141172790_141185539	1/1	t0001	345	407	85	70	202	16	32	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	t0002	345	7	5	2	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB9_chr5_141182161_141196541	0/0	t0000	0	1	0	0	0	0	1	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	1/0	t0001	1988	126	21	26	62	3	13	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/1	t0002	1988	46	7	4	28	2	4	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0003	2003	38	1	4	30	0	3	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0004	2004	32	0	2	27	1	2	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0005	2005	22	0	8	11	1	2	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0006	1999	15	3	6	1	3	2	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0007	1990	15	9	4	0	1	1	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0008	2006	13	0	1	11	0	1	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0009	2000	10	4	2	3	0	1	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0010	2008	9	0	3	5	0	1	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0011	2007	9	0	2	7	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0012	1989	8	6	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0013	1999	7	0	0	7	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0014	1987	7	0	1	0	4	2	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0015	1989	6	0	0	6	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0016	2003	5	3	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0017	2004	5	4	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0018	1998	4	1	1	1	1	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0019	1990	4	4	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0020	2000	4	3	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0021	2001	3	0	0	3	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0022	1999	3	3	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0023	2000	3	3	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0024	2005	3	3	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0025	1989	3	2	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0026	1989	3	1	0	2	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0027	1990	3	1	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0028	159	2	1	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0029	2002	2	0	1	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0030	2010	2	0	0	2	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0031	2003	2	0	0	2	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0032	2010	2	0	0	2	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0033	2004	2	0	0	0	2	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0034	1998	2	1	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0035	1996	2	0	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0036	2004	2	0	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0037	1989	2	0	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0038	1988	1	0	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0039	2009	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0040	2003	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0041	2011	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0042	2008	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0043	2007	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0044	2006	1	0	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	t0045	2002	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541