Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASXL2_chr2_25728753_25883487	0/0	t0026	8540	2	0	2	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0027	8542	1	0	0	1	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0028	8543	1	0	0	1	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0029	8542	1	0	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0030	8542	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0031	8542	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0032	8541	1	0	0	0	0	1	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0033	8544	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0034	8543	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0035	8542	1	0	0	0	0	1	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0036	8539	1	0	0	0	0	1	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0037	8540	1	0	0	0	0	1	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0038	8540	1	0	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0039	8542	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0040	8542	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0041	8542	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0042	8543	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0043	8542	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/1	t0044	8542	1	0	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0045	8542	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0046	8542	1	0	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0047	8542	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0048	8542	1	0	0	0	0	1	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0049	8540	1	0	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0050	8540	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0051	8542	1	0	0	1	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	t0052	8542	1	0	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL3_chr18_33573219_33756195	0/0	t0001	5007	33	8	8	12	1	4	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/1	t0002	5010	20	2	10	2	0	5	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0003	5011	18	1	7	1	3	6	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0004	5012	16	5	0	8	0	3	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0005	5012	12	3	2	5	0	2	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0006	5015	8	0	0	5	0	3	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0007	5007	6	6	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0008	5012	5	5	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0009	5019	5	5	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0010	5006	5	0	0	5	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0011	5013	5	1	2	1	0	1	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0012	5010	4	4	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	1/0	t0013	5014	4	0	3	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0014	5021	3	1	0	2	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0015	4998	2	0	2	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0016	5000	2	0	0	2	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0017	5006	2	1	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0018	5009	2	2	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0019	5007	2	0	0	1	0	1	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0020	5015	2	0	1	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0021	5018	2	0	0	2	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0022	5019	2	2	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0023	5010	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195