JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHGA11_chr5_141416051_141517975	0/0	t0010	1980	5	0	1	4	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0011	1977	4	2	1	0	0	1	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0012	1980	3	3	0	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0013	1980	2	0	0	2	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0014	1980	2	0	0	2	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0015	1980	1	0	0	0	0	1	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0016	1980	1	1	0	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0017	1980	1	0	0	1	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0018	1980	1	0	0	0	0	1	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0019	1980	1	1	0	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0020	1980	1	1	0	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0021	1980	1	0	0	1	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	t0022	1980	1	0	0	0	1	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA12_chr5_141425507_141517975	1/1	t0001	2056	175	64	35	55	7	12	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0002	2056	42	8	12	16	2	4	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0003	2056	36	7	10	16	1	2	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0004	2056	27	0	10	17	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0005	2053	13	2	1	0	1	9	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0006	2053	8	0	0	8	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0007	2056	4	4	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0008	2056	2	0	0	2	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0009	2056	2	0	0	2	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0010	2056	2	2	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0011	2056	1	0	0	1	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0012	2056	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0013	2056	1	0	0	0	0	1	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0014	2056	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0015	2056	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0016	2056	1	0	0	1	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	t0017	2056	1	0	0	0	1	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA1_chr5_141325514_141517975	1/1	t0001	1974	154	61	29	44	7	11	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0002	1974	35	7	8	13	4	3	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0003	1974	31	7	8	13	1	2	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0004	1971	13	2	1	0	1	9	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0005	1974	11	0	2	9	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0006	1971	7	0	0	7	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0007	1974	6	0	6	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0008	1974	2	2	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0009	1974	2	0	0	2	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0010	1974	2	0	0	2	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0011	1974	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0012	1974	1	0	0	0	0	1	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0013	1974	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0014	1974	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	t0015	1974	1	0	0	0	1	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA2_chr5_141333760_141517975	1/1	t0001	2015	154	63	25	46	7	11	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0002	2015	36	7	8	14	4	3	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0003	2015	32	7	8	14	1	2	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0004	2015	19	0	8	11	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0005	2012	13	2	1	0	1	9	copy fasta	PCDHGA2	chr5	141333760	141517975