JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHGA2_chr5_141333760_141517975	0/0	t0006	2012	7	0	0	7	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0007	2015	2	2	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0008	2015	2	0	0	2	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0009	2015	2	0	0	2	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0010	2015	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0011	2015	1	0	0	0	0	1	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0012	2015	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0013	2015	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	t0014	2015	1	0	0	0	1	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA3_chr5_141338829_141517975	1/1	t0001	2008	150	59	27	45	7	10	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0002	2008	33	7	7	12	4	3	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0003	2008	32	7	8	14	1	2	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0004	2008	20	0	8	12	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0005	2005	13	2	1	0	1	9	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0006	2005	7	0	0	7	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0007	2008	4	4	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0008	2008	2	2	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0009	2008	2	0	0	2	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0010	2008	2	0	0	2	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0011	2008	1	1	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0012	2008	1	1	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0013	2008	1	1	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0014	2008	1	0	0	0	1	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	t0015	2008	1	0	1	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA4_chr5_141350021_141517975	1/1	t0001	1890	153	61	28	44	7	11	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0002	1890	35	7	8	13	4	3	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0003	1890	34	7	10	14	1	2	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0004	1890	21	0	9	12	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0005	1887	13	2	1	0	1	9	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0006	1887	7	0	0	7	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0007	1890	2	2	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0008	1890	2	0	0	2	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0009	1890	1	0	0	1	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0010	1890	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0011	1890	1	0	0	0	0	1	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0012	1890	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0013	1890	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0014	1890	1	0	0	0	1	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	t0015	1890	1	0	0	1	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA5_chr5_141359162_141517975	1/1	t0001	1972	162	64	29	49	7	11	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0002	1972	38	7	9	15	4	3	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0003	1972	35	8	9	15	1	2	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0004	1972	24	0	8	16	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0005	1969	13	2	1	0	1	9	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0006	1969	7	0	0	7	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0007	1972	2	2	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0008	1972	2	0	0	2	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0009	1972	2	0	0	2	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0010	1972	1	0	0	1	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0011	1972	1	1	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975