JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHGA5_chr5_141359162_141517975	0/0	t0012	1972	1	0	0	0	0	1	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0013	1972	1	1	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0014	1972	1	1	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0015	1972	1	0	0	1	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	t0016	1972	1	0	0	0	1	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA6_chr5_141368891_141517975	1/1	t0001	1996	159	64	23	52	7	11	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0002	1996	39	7	9	16	4	3	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0003	1996	36	8	9	16	1	2	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0004	1996	25	0	8	17	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0005	1993	13	2	1	0	1	9	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0006	1993	8	0	0	8	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0007	1996	2	2	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0008	1996	2	0	0	2	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0009	1996	2	0	0	2	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0010	1996	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0011	1996	1	0	0	0	0	1	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0012	1996	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0013	1996	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0014	1996	1	0	0	1	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	t0015	1996	1	0	0	0	1	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA7_chr5_141377742_141517975	1/1	t0001	1961	160	61	28	51	7	11	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0002	1961	40	7	10	15	4	4	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0003	1961	33	7	7	16	1	2	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0004	1961	25	0	8	17	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0005	1958	13	2	1	0	1	9	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0006	1958	8	0	0	8	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0007	1961	2	2	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0008	1961	2	2	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0009	1961	2	0	0	2	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0010	1961	2	0	0	2	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0011	1961	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0012	1961	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0013	1961	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0014	1961	1	0	0	1	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	t0015	1961	1	0	0	0	1	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA8_chr5_141387633_141517975	1/1	t0001	1984	169	65	31	53	7	11	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0002	1984	42	7	11	16	4	4	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0003	1984	34	7	7	17	1	2	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0004	1984	25	0	8	17	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0005	1981	13	2	1	0	1	9	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0006	1981	8	0	0	8	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0007	1984	2	2	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0008	1984	2	0	0	2	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0009	1984	2	0	0	2	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0010	1984	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0011	1984	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0012	1984	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0013	1984	1	0	0	1	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	t0014	1984	1	0	0	0	1	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA9_chr5_141397778_141517975	1/1	t0001	1978	162	60	29	52	7	12	copy fasta	PCDHGA9	chr5	141397778	141517975