JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHGA9_chr5_141397778_141517975	0/0	t0002	1978	43	8	11	16	4	4	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0003	1978	33	7	7	16	1	2	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0004	1978	25	0	8	17	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0005	1975	13	2	1	0	1	9	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0006	1975	8	0	0	8	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0007	1978	4	4	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0008	1978	3	3	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0009	1978	2	0	0	2	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0010	1978	2	0	0	2	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0011	1978	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0012	1978	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0013	1978	1	0	0	0	0	1	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0014	1978	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0015	1978	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0016	1978	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	t0017	1978	1	0	0	0	1	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGB1_chr5_141345099_141517975	1/1	t0001	1965	156	62	27	47	7	11	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0002	1965	35	8	10	14	1	2	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0003	1965	34	7	7	13	4	3	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0004	1965	22	0	9	13	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0005	1962	13	2	1	0	1	9	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0006	1962	7	0	0	7	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0007	1965	2	2	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0008	1965	2	0	0	2	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0009	1965	2	0	0	2	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0010	1965	1	1	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0011	1965	1	0	0	0	0	1	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0012	1965	1	1	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0013	1965	1	1	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	t0014	1965	1	0	0	0	1	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB2_chr5_141354994_141517975	1/1	t0001	1945	155	58	29	48	7	11	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0002	1945	38	7	9	15	4	3	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0003	1945	34	8	9	14	1	2	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0004	1945	21	0	8	13	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0005	1942	13	2	1	0	1	9	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0006	1942	7	0	0	7	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0007	1945	6	6	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0008	1945	2	2	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0009	1945	2	0	0	2	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0010	1945	2	0	0	2	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0011	1945	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0012	1945	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0013	1945	1	1	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0014	1945	1	0	0	0	0	1	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0015	1945	1	1	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0016	1945	1	1	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0017	1945	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	t0018	1945	1	0	0	0	1	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB3_chr5_141365242_141517975	1/1	t0001	1956	165	64	29	52	7	11	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0002	1956	38	7	9	15	4	3	copy fasta	PCDHGB3	chr5	141365242	141517975