JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHGB3_chr5_141365242_141517975	0/0	t0003	1956	36	8	9	16	1	2	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0004	1956	25	0	8	17	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0005	1953	10	0	0	0	1	9	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0006	1953	7	0	0	7	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0007	1953	3	2	1	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0008	1956	2	2	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0009	1956	2	0	0	2	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0010	1956	2	0	0	2	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0011	1956	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0012	1956	1	0	0	0	0	1	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0013	1956	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0014	1956	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0015	1956	1	0	0	1	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	t0016	1956	1	0	0	0	1	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB4_chr5_141382698_141517975	1/1	t0001	1990	160	61	27	52	7	11	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0002	1990	40	7	10	15	4	4	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0003	1990	33	7	6	17	1	2	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0004	1990	25	0	8	17	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0005	1987	13	2	1	0	1	9	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0006	1987	8	0	0	8	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0007	1990	4	4	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0008	1990	2	2	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0009	1990	2	0	0	2	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0010	1990	2	0	0	2	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0011	1990	1	1	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0012	1990	1	1	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0013	1990	1	1	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0014	1990	1	0	0	1	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	t0015	1990	1	0	0	0	1	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB5_chr5_141392947_141517975	1/0	t0001	1984	110	32	20	44	4	9	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/1	t0002	1984	49	27	9	7	3	2	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0003	1984	28	3	11	8	3	3	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0004	1984	27	2	6	16	1	2	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0005	1984	19	0	7	12	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0006	1984	13	3	0	8	1	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0007	1981	9	0	0	0	1	8	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0008	1981	8	0	0	8	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0009	1984	6	0	1	5	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0010	1984	5	5	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0011	1981	4	2	1	0	0	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0012	1984	4	4	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0013	1984	3	1	1	1	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0014	1984	2	2	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0015	1984	2	0	0	2	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0016	1984	2	0	0	2	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0017	1984	2	0	0	2	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0018	1984	1	0	0	1	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0019	1984	1	1	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0020	1984	1	1	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	t0021	1984	1	1	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975