JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCDHGC3_chr5_141470966_141517975	0/0	t0010	1954	1	1	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	t0011	1954	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	t0012	1954	1	1	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	t0013	1954	1	0	0	0	0	1	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	t0014	1954	1	1	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	t0015	1954	1	0	0	0	0	1	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	t0016	1954	1	1	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	t0017	1954	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	t0018	1954	1	0	0	0	1	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC4_chr5_141480030_141517975	1/1	t0001	1947	198	68	39	61	11	17	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0002	1947	45	8	12	17	4	4	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0003	1947	40	8	10	17	1	4	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0004	1947	32	0	10	22	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0005	1944	13	2	1	0	1	9	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0006	1944	9	0	0	9	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0007	1947	5	5	0	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0008	1947	2	0	0	2	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0009	1947	2	0	0	2	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0010	1947	1	0	0	1	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0011	1947	1	1	0	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0012	1947	1	0	0	0	0	1	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0013	1947	1	1	0	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0014	1947	1	0	0	0	0	1	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0015	1947	1	1	0	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0016	1947	1	0	0	1	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	t0017	1947	1	0	0	0	1	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC5_chr5_141484081_141517975	1/1	t0001	1963	147	48	37	32	11	17	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0002	1966	40	5	12	18	3	2	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0003	1966	35	4	10	16	1	4	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0004	1966	33	0	10	23	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0005	1963	28	0	0	28	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0006	1966	26	16	2	8	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0007	1963	12	2	1	0	1	8	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0008	1963	9	0	0	9	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0009	1963	6	3	0	0	1	2	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0010	1963	5	4	0	1	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0011	1963	5	5	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0012	1963	4	4	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0013	1963	2	0	0	2	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0014	1966	2	0	0	2	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0015	1963	1	0	0	1	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0016	1960	1	0	0	0	0	1	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0017	1963	1	0	0	0	0	1	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0018	1963	1	0	0	0	1	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0019	1963	1	0	0	1	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0020	1966	1	1	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0021	1966	1	0	0	0	0	1	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0022	1966	1	1	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0023	1966	1	1	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	t0024	1966	1	0	0	1	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975