JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCED1A_chr20_2830314_2845655	0/1	t0001	615	297	39	63	150	13	31	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	t0002	615	112	46	12	42	3	9	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	t0003	615	12	1	1	9	0	1	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	t0004	615	5	0	0	5	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	t0005	615	4	0	0	4	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	t0006	615	4	4	0	0	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	1/0	t0007	615	1	0	0	0	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	t0008	615	1	0	0	0	0	1	copy fasta	PCED1A	chr20	2830314	2845655
PCED1B_chr12_47074621_47241660	1/0	t0001	1012	206	66	21	92	9	17	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/1	t0002	1010	110	20	31	41	7	10	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	t0003	1010	1	1	0	0	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	t0004	1010	1	0	0	1	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	t0005	1010	1	1	0	0	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	t0006	1010	1	0	0	1	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	t0007	1010	1	0	0	0	0	1	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	t0008	1010	1	0	0	1	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCF11_chr11_83152131_83190794	1/1	t0001	1210	329	52	61	171	13	30	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	t0002	1211	27	11	3	6	1	6	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	t0003	1212	26	19	4	3	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	t0004	1214	5	4	0	0	0	1	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	t0005	1207	3	3	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	t0006	1210	2	0	0	0	0	2	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	t0007	1210	1	1	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	t0008	1210	1	0	0	0	0	1	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	t0009	1210	1	1	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	t0010	1210	1	1	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCGF1_chr2_74500043_74512695	1/1	t0001	128	368	88	74	152	12	40	copy fasta	PCGF1	chr2	74500043	74512695
PCGF2_chr17_38728898_38753336	0/1	t0001	1600	219	43	40	112	4	19	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0002	1602	68	7	21	21	4	15	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0003	1601	47	30	3	7	2	5	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0004	1601	12	0	2	9	0	1	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0005	1602	12	0	0	12	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0006	1601	8	2	0	6	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0007	1601	8	8	0	0	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0008	1601	4	1	1	2	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0009	1600	4	0	4	0	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0010	1601	3	0	1	0	0	2	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0011	1603	2	0	1	1	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0012	1601	2	0	0	2	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0013	1602	2	1	1	0	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0014	1602	1	0	0	1	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0015	1601	1	0	1	0	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0016	1601	1	0	0	1	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0017	1602	1	1	0	0	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0018	1600	1	0	0	1	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0019	1602	1	1	0	0	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0020	1601	1	0	0	1	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0021	1602	1	0	0	1	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0022	1601	1	0	1	0	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	t0023	1600	1	0	0	1	0	0	copy fasta	PCGF2	chr17	38728898	38753336