JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCGF3_chr4_700832_775089	0/0	t0001	4339	59	7	16	33	1	2	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0002	4337	51	8	9	25	3	6	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0003	4337	41	0	14	18	2	7	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0004	4318	25	24	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/1	t0005	4338	23	1	3	17	0	1	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0006	4337	21	0	4	11	1	5	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0007	4339	20	3	2	14	0	1	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0008	4337	16	2	2	6	1	5	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0009	4337	7	6	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0010	4338	6	0	0	6	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0011	4339	5	3	2	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0012	4326	5	5	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0013	4337	4	0	1	1	1	1	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0014	4333	4	0	2	0	0	2	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0015	4338	4	0	0	4	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0016	4338	3	3	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0017	4340	3	3	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	1/0	t0018	4339	3	0	1	0	1	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0019	4320	3	3	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0020	4336	3	3	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0021	4337	2	0	1	0	1	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0022	4337	2	0	0	0	1	1	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0023	4338	2	1	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0024	4339	2	2	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0025	4334	2	2	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0026	4334	2	2	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0027	4337	2	2	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0028	4341	2	0	2	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0029	4338	2	0	0	2	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0030	4339	2	0	0	2	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0031	4337	2	0	0	0	0	2	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0032	4338	2	0	0	2	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0033	4337	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0034	4338	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0035	4337	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0036	4338	1	1	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0037	4339	1	1	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0038	4337	1	1	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0039	4338	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0040	4339	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0041	4339	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0042	4337	1	0	0	0	0	1	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0043	4339	1	0	0	0	1	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0044	4339	1	1	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0045	4337	1	0	0	0	0	1	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0046	4341	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0047	4338	1	0	0	0	0	1	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0048	4337	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0049	4337	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0050	4337	1	0	0	0	0	1	copy fasta	PCGF3	chr4	700832	775089