Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASXL3_chr18_33573219_33756195	0/0	t0024	5010	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0025	5011	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0026	5016	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0027	5021	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0028	5019	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0029	5021	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0030	5003	1	0	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0031	4993	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0032	5003	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0033	5006	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0034	5001	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0035	5002	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0036	5007	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0037	5001	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0038	5006	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0039	5009	1	0	0	0	0	1	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0040	5015	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0041	5009	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0042	5011	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0043	5010	1	0	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0044	5011	1	0	0	0	1	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0045	5024	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0046	5012	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0047	5007	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0048	5006	1	0	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0049	5008	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0050	5010	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0051	5015	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0052	5012	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0053	5011	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0054	5012	1	0	0	0	1	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0055	5008	1	0	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0056	5015	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0057	5009	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0058	5015	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0059	5014	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0060	5014	1	0	0	0	0	1	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0061	5011	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0062	5015	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0063	5018	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0064	5014	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0065	5013	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0066	5017	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0067	5018	1	0	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0068	5016	1	0	0	0	0	1	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0069	5020	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0070	5027	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0071	5025	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0072	5030	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0073	5028	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195