JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCGF3_chr4_700832_775089	0/0	t0051	4337	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0052	4337	1	1	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0053	4337	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0054	4338	1	0	0	0	0	1	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0055	4338	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0056	4338	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0057	4337	1	1	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0058	4337	1	1	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0059	4337	1	0	0	0	1	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0060	4337	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0061	4337	1	1	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0062	4337	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0063	4337	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0064	4333	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0065	4337	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0066	4337	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0067	4337	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	t0068	4337	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF5_chr10_91215663_91289337	1/1	t0001	6379	158	24	30	88	5	9	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0002	6379	41	0	12	21	3	5	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0003	6379	28	16	6	0	5	1	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0004	6379	15	13	2	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0005	6379	6	5	1	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0006	6379	6	5	1	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0007	6379	5	0	2	0	1	2	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0008	6379	5	5	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0009	6379	5	1	4	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0010	6380	4	4	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0011	6379	4	1	1	0	0	2	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0012	6379	2	2	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0013	6379	2	2	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0014	6379	2	2	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0015	6379	2	0	0	0	0	2	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0016	6379	2	0	0	2	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0017	6379	2	2	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0018	6379	1	1	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0019	6379	1	0	1	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0020	6379	1	1	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0021	6379	1	1	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0022	6380	1	1	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0023	6379	1	0	1	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0024	6379	1	0	1	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0025	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0026	6379	1	1	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0027	6379	1	1	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0028	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0029	6379	1	0	1	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0030	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0031	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0032	6379	1	0	0	0	1	0	copy fasta	PCGF5	chr10	91215663	91289337