JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCGF5_chr10_91215663_91289337	0/0	t0033	6380	1	0	0	0	1	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0034	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0035	6356	1	0	1	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0036	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0037	6379	1	1	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0038	6380	1	0	1	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0039	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0040	6379	1	1	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0041	6379	1	0	1	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0042	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0043	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0044	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0045	6379	1	0	0	1	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	t0046	6379	1	0	0	0	0	1	copy fasta	PCGF5	chr10	91215663	91289337
PCGF6_chr10_103297796_103356140	1/1	t0001	1184	314	72	59	138	14	29	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	t0002	1184	20	1	8	6	2	3	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	t0003	1184	19	16	3	0	0	0	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	t0004	1184	15	0	0	15	0	0	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	t0005	1184	1	1	0	0	0	0	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	t0006	1184	1	1	0	0	0	0	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	t0007	1184	1	0	0	1	0	0	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	t0008	1184	1	1	0	0	0	0	copy fasta	PCGF6	chr10	103297796	103356140
PCID2_chr13_113172536_113213669	0/1	t0001	698	324	49	73	141	18	42	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	0/0	t0002	698	41	0	2	39	0	0	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	1/0	t0003	698	37	31	5	0	0	0	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	0/0	t0004	698	7	7	0	0	0	0	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	0/0	t0005	698	4	0	0	0	0	4	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	0/0	t0006	698	1	1	0	0	0	0	copy fasta	PCID2	chr13	113172536	113213669
PCIF1_chr20_45929683_45953020	1/1	t0001	575	374	87	65	178	10	32	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	t0002	575	25	1	7	4	5	8	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	t0003	575	13	0	1	8	1	3	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	t0004	575	4	4	0	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	t0005	575	2	1	1	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	t0006	575	1	0	0	0	0	1	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	t0007	575	1	0	0	1	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	t0008	555	1	1	0	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	t0009	575	1	0	0	1	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCK1_chr20_57556110_57573121	0/1	t0001	2446	96	17	10	52	5	11	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0002	2448	69	6	8	48	0	7	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	1/0	t0003	2452	53	0	5	39	1	7	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0004	2458	49	0	9	39	0	1	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0005	2454	21	1	10	3	2	5	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0006	2450	15	14	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0007	2450	15	11	0	4	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0008	2450	15	0	0	14	0	1	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0009	2448	11	1	4	1	2	3	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0010	2450	10	0	6	0	0	4	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0011	2448	9	2	3	0	3	1	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0012	2444	8	4	1	0	2	1	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0013	2460	7	0	2	5	0	0	copy fasta	PCK1	chr20	57556110	57573121