JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCK1_chr20_57556110_57573121	0/0	t0014	2453	6	5	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0015	2448	6	5	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0016	2456	6	0	1	4	1	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0017	2460	5	3	2	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0018	2442	5	0	3	0	0	2	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0019	2446	4	4	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0020	2462	3	0	1	2	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0021	2450	2	2	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0022	2442	2	0	0	2	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0023	2455	2	2	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0024	2452	2	2	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0025	2452	2	0	1	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0026	2456	2	2	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0027	2446	2	0	0	2	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0028	2450	2	0	0	1	0	1	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0029	2450	2	0	1	0	0	1	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0030	2452	2	0	0	0	0	2	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0031	2454	2	2	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0032	2458	2	0	0	2	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0033	2446	1	0	0	0	1	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0034	2446	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0035	2448	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0036	2455	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0037	2450	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0038	2450	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0039	2452	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0040	2454	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0041	2462	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0042	2464	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0043	2450	1	0	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0044	2438	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0045	2442	1	0	0	0	1	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0046	2444	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0047	2448	1	0	0	0	0	1	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0048	2448	1	0	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0049	2448	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0050	2448	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0051	2452	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0052	2452	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0053	2452	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0054	2454	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0055	2454	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0056	2456	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0057	2464	1	0	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0058	2464	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0059	2466	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0060	2448	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0061	2458	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0062	2460	1	0	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	t0063	2458	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121