JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCK2_chr14_24089311_24109125	1/1	t0001	257	402	96	66	182	16	40	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	t0002	257	2	0	0	0	0	2	copy fasta	PCK2	chr14	24089311	24109125
PCLAF_chr15_64359304_64386441	0/1	t0001	1798	182	40	43	68	10	20	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0002	1797	15	14	0	1	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0003	1799	12	1	0	10	0	1	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0004	1799	11	1	0	4	1	5	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0005	1798	9	0	0	0	0	9	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	1/0	t0006	1797	8	7	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0007	1793	7	0	2	0	1	4	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0008	1798	6	6	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0009	1797	5	0	0	4	1	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0010	1797	5	5	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0011	1798	4	4	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0012	1798	3	0	1	0	0	2	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0013	1798	3	2	1	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0014	1798	3	2	1	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0015	1798	3	1	0	2	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0016	1798	2	0	0	2	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0017	1799	2	0	0	0	0	2	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0018	1798	2	2	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0019	1797	2	2	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0020	1798	2	0	0	1	0	1	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0021	1798	2	1	1	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0022	1798	1	1	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0023	1799	1	0	0	0	1	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0024	1798	1	1	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0025	1797	1	0	0	0	0	1	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0026	1798	1	0	1	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0027	1799	1	1	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0028	1797	1	0	0	0	0	1	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0029	1797	1	1	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0030	1799	1	1	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLAF_chr15_64359304_64386441	0/0	t0031	1797	1	1	0	0	0	0	copy fasta	PCLAF	chr15	64359304	64386441
PCLO_chr7_82749012_83167884	0/0	t0001	4848	45	5	12	13	4	11	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	1/0	t0002	4856	27	8	5	6	0	7	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0003	4856	21	13	1	7	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0004	4856	12	0	5	4	1	2	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/1	t0005	4848	10	7	2	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0006	4848	7	7	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0007	4856	7	0	0	7	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0008	4856	6	5	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0009	4856	6	0	2	0	1	3	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0010	4856	5	4	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0011	4848	4	4	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0012	4847	4	0	3	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0013	4858	3	3	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0014	4856	3	3	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0015	4848	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0016	4848	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	t0017	4848	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884