JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCM1_chr8_17917988_18034948	0/0	t0032	2567	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0033	2570	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0034	2570	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0035	2576	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0036	2568	1	0	0	0	1	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0037	2578	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0038	2578	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/1	t0039	2579	1	0	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0040	2577	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0041	2569	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0042	2577	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0043	2576	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0044	2569	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0045	2569	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0046	2568	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0047	2568	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0048	2567	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0049	2570	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0050	2570	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0051	2576	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0052	2574	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0053	2573	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0054	2571	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0055	2568	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0056	2575	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0057	2567	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0058	2568	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0059	2569	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0060	2569	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0061	2579	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0062	2579	1	0	0	0	0	1	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0063	2576	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0064	2572	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0065	2571	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0066	2571	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0067	2569	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	t0068	2570	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCMT1_chr6_149744741_149816419	0/1	t0001	1003	233	81	35	88	7	21	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	1/0	t0002	1003	93	8	24	39	9	12	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	0/0	t0003	1003	2	0	0	0	0	2	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	0/0	t0004	1003	1	0	0	0	0	1	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	0/0	t0005	1003	1	1	0	0	0	0	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	0/0	t0006	1003	1	1	0	0	0	0	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	0/0	t0007	1003	1	1	0	0	0	0	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	0/0	t0008	1003	1	0	0	1	0	0	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	0/0	t0009	1003	1	0	1	0	0	0	copy fasta	PCMT1	chr6	149744741	149816419
PCMTD1_chr8_51812583_51904036	0/0	t0001	2972	95	36	8	46	0	5	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/1	t0002	2964	89	3	19	53	4	9	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0003	2977	51	3	10	32	3	3	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0004	2973	22	19	2	1	0	0	copy fasta	PCMTD1	chr8	51812583	51904036