JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCMTD1_chr8_51812583_51904036	0/0	t0005	2972	11	4	0	6	0	1	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	1/0	t0006	2971	9	7	1	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0007	2972	7	0	2	2	0	3	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0008	2971	7	0	0	7	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0009	2974	6	1	5	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0010	2974	5	0	2	0	2	1	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0011	2965	4	0	3	0	0	1	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0012	2972	4	0	0	4	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0013	2972	4	4	0	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0014	2973	3	0	1	1	1	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0015	2964	3	0	0	3	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0016	2973	3	0	1	2	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0017	2968	3	3	0	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0018	2973	1	1	0	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0019	2973	1	1	0	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0020	2972	1	0	0	1	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0021	2972	1	0	1	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0022	2964	1	1	0	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0023	2972	1	1	0	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0024	2974	1	0	1	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0025	2964	1	0	0	0	0	1	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0026	2964	1	0	0	0	1	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	t0027	2964	1	0	0	0	1	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD2_chr20_64250748_64281226	1/1	t0001	2774	203	35	47	73	7	39	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0002	2779	46	21	9	10	3	3	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0003	2774	26	0	3	19	2	2	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0004	2778	13	12	1	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0005	2780	7	1	3	0	3	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0006	2775	6	3	0	3	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0007	2779	4	4	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0008	2777	3	3	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0009	2780	3	0	2	0	0	1	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0010	2775	2	1	0	1	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0011	2777	2	2	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0012	2779	2	2	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0013	2780	2	0	0	1	1	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0014	2779	2	2	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0015	2779	2	1	1	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0016	2774	1	0	0	1	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0017	2774	1	0	0	1	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0018	2774	1	0	0	1	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0019	2774	1	0	0	0	0	1	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0020	2774	1	1	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0021	2778	1	1	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0022	2779	1	1	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0023	2778	1	1	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	t0024	2780	1	1	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCNA_chr20_5109953_5124958	1/1	t0001	491	332	55	57	169	14	35	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	t0002	491	39	25	12	0	2	0	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	t0003	491	13	12	1	0	0	0	copy fasta	PCNA	chr20	5109953	5124958