JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCNA_chr20_5109953_5124958	0/0	t0004	491	2	0	0	2	0	0	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	t0005	491	1	1	0	0	0	0	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	t0006	491	1	1	0	0	0	0	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	t0007	491	1	0	0	0	0	1	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	t0008	491	1	0	0	1	0	0	copy fasta	PCNA	chr20	5109953	5124958
PCNP_chr3_101569180_101599465	0/0	t0001	1749	347	82	58	159	12	36	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/0	t0002	1749	36	5	8	16	1	6	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/1	t0003	1749	33	0	8	23	1	0	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	1/0	t0004	1749	5	4	0	0	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/0	t0005	1897	1	0	0	1	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/0	t0006	1749	1	1	0	0	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/0	t0007	1749	1	0	0	1	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNT_chr21_46319156_46450769	1/1	t0001	516	314	79	62	116	13	42	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	t0002	517	7	0	0	4	0	3	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	t0003	512	4	3	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	t0004	516	4	0	3	0	1	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	t0005	517	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	t0006	516	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	t0007	516	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNX1_chr14_70902459_71120382	0/0	t0001	5841	34	3	6	14	3	8	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0002	5837	32	7	12	9	0	4	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0003	5841	27	3	7	13	0	4	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0004	5840	24	5	5	7	2	5	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0005	5840	20	3	5	9	1	2	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0006	5840	16	5	4	4	2	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0007	5842	15	1	0	14	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/1	t0008	5839	15	7	0	6	0	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0009	5841	14	0	1	13	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0010	5842	13	1	2	7	0	3	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0011	5839	12	1	1	9	0	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0012	5842	11	0	1	7	0	3	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0013	5840	11	10	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0014	5839	7	0	0	7	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0015	5838	7	2	0	4	0	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0016	5840	6	0	4	2	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0017	5838	4	2	1	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0018	5843	4	0	0	4	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0019	5839	4	4	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0020	5837	3	0	0	3	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0021	5840	3	3	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	1/0	t0022	5840	3	2	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0023	5840	3	0	0	3	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0024	5837	2	0	0	0	1	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0025	5838	2	0	0	2	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0026	5839	2	2	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0027	5840	2	0	0	2	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0028	5840	2	0	0	0	0	2	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0029	5836	2	0	0	2	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0030	5839	2	0	0	2	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0031	5840	2	1	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382