JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCNX1_chr14_70902459_71120382	0/0	t0032	5837	2	1	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0033	5837	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0034	5840	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0035	5839	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0036	5839	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0037	5838	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0038	5837	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0039	5837	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0040	5837	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0041	5840	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0042	5838	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0043	5838	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0044	5837	1	0	0	0	0	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0045	5837	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0046	5842	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0047	5840	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0048	5838	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0049	5840	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0050	5839	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0051	5840	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0052	5841	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0053	5837	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0054	5839	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0055	5839	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0056	5841	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0057	5842	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0058	5840	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0059	5840	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0060	5841	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0061	5840	1	0	0	0	1	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0062	5836	1	0	0	0	0	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0063	5836	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0064	5842	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0065	5837	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0066	5841	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0067	5842	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0068	5841	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0069	5842	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0070	5840	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0071	5838	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0072	5840	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0073	5840	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0074	5842	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0075	5837	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0076	5839	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0077	5828	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	t0078	5839	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX2_chr1_232978435_233300725	1/0	t0001	1117	71	23	17	22	0	8	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/1	t0002	1113	29	8	6	10	3	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0003	1118	7	4	2	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725