Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASXL3_chr18_33573219_33756195	0/0	t0074	5029	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0075	5030	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0076	5031	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0077	5030	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0078	5036	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0079	5038	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0080	5040	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0081	5062	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	t0082	5063	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASZ1_chr7_117358222_117432493	1/1	t0001	408	188	44	43	68	9	22	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	t0002	408	83	3	4	64	3	9	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	t0003	408	35	31	1	2	0	1	copy fasta	ASZ1	chr7	117358222	117432493
ATAD1_chr10_87746512_87823226	1/1	t0001	3249	149	34	27	60	5	21	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0002	3250	102	13	7	74	0	8	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0003	3254	77	22	21	21	5	8	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0004	3250	11	10	1	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0005	3250	3	3	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0006	3249	3	3	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0007	3250	2	0	0	2	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0008	3254	1	1	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0009	3250	1	1	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0010	3249	1	0	0	0	0	1	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0011	3250	1	1	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0012	3250	1	1	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0013	3250	1	0	0	1	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0014	3249	1	0	1	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0015	3250	1	1	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0016	3250	1	1	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0017	3250	1	1	0	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0018	3249	1	0	0	1	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0019	3254	1	0	1	0	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	t0020	3249	1	0	0	1	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD2B_chr2_23743664_23932123	1/1	t0001	3736	103	40	20	23	8	10	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0002	3736	78	17	18	28	6	9	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0003	3736	31	14	6	6	1	4	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0004	3735	16	1	7	5	1	2	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0005	3736	6	0	0	6	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0006	3736	2	2	0	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0007	3736	2	0	0	0	0	2	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0008	3736	1	0	1	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0009	3736	1	0	1	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0010	3736	1	0	0	0	0	1	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0011	3736	1	0	0	1	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0012	3736	1	0	1	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0013	3736	1	1	0	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0014	3736	1	1	0	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	t0015	3736	1	0	0	1	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2_chr8_123314850_123401447	0/0	t0001	1375	145	43	37	46	3	16	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	1/1	t0002	1375	112	28	20	41	3	18	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	t0003	1375	9	9	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447