JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCP4L1_chr1_161253745_161290450	0/0	t0009	1200	1	0	0	0	1	0	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	t0010	1200	1	0	1	0	0	0	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4_chr21_39862438_39934392	1/1	t0001	346	413	86	66	203	14	42	copy fasta	PCP4	chr21	39862438	39934392
PCP4_chr21_39862438_39934392	0/0	t0002	346	6	6	0	0	0	0	copy fasta	PCP4	chr21	39862438	39934392
PCP4_chr21_39862438_39934392	0/0	t0003	346	2	2	0	0	0	0	copy fasta	PCP4	chr21	39862438	39934392
PCP4_chr21_39862438_39934392	0/0	t0004	346	2	0	0	0	0	2	copy fasta	PCP4	chr21	39862438	39934392
PCP4_chr21_39862438_39934392	0/0	t0005	346	2	0	0	0	0	2	copy fasta	PCP4	chr21	39862438	39934392
PCP4_chr21_39862438_39934392	0/0	t0006	346	1	1	0	0	0	0	copy fasta	PCP4	chr21	39862438	39934392
PCP4_chr21_39862438_39934392	0/0	t0007	346	1	1	0	0	0	0	copy fasta	PCP4	chr21	39862438	39934392
PCP4_chr21_39862438_39934392	0/0	t0008	346	1	0	0	1	0	0	copy fasta	PCP4	chr21	39862438	39934392
PCSK1N_chrX_48826096_48840610	1/1	t0001	243	302	76	59	130	11	24	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	t0002	244	4	0	0	3	0	1	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	t0003	243	4	0	1	0	2	1	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	t0004	243	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	t0005	243	1	1	0	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	t0006	243	1	0	1	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	t0007	243	1	0	1	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1_chr5_96385333_96438248	1/0	t0001	2875	143	29	35	57	9	12	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0002	2877	77	20	10	34	2	11	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0003	2875	50	6	5	28	0	11	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/1	t0004	2875	43	2	14	22	1	3	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0005	2877	27	9	8	8	1	1	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0006	2875	14	0	0	11	1	2	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0007	2875	5	0	0	5	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0008	2875	5	5	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0009	2875	3	3	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0010	2878	3	3	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0011	2878	3	3	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0012	2875	2	2	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0013	2878	2	1	1	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0014	2875	2	2	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0015	2877	2	0	2	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0016	2875	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0017	2875	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0018	2878	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0019	2877	1	0	0	0	0	1	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0020	2875	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0021	2875	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0022	2875	1	0	1	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0023	2875	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0024	2875	1	0	0	0	0	1	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0025	2875	1	0	0	1	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	t0026	2875	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK2_chr20_17222040_17489578	1/0	t0001	2775	42	13	4	23	0	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0002	2781	30	1	4	20	2	3	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0003	2773	24	15	5	0	1	3	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0004	2776	16	2	3	11	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0005	2781	16	2	3	9	1	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0006	2780	15	2	4	2	4	3	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0007	2775	12	1	1	7	2	1	copy fasta	PCSK2	chr20	17222040	17489578