JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCSK2_chr20_17222040_17489578	0/0	t0008	2782	8	1	2	3	0	2	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0009	2775	7	0	3	0	3	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0010	2774	7	7	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0011	2775	7	6	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0012	2776	6	6	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0013	2776	6	1	0	5	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/1	t0014	2773	6	4	0	0	0	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0015	2773	5	0	1	4	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0016	2780	5	1	3	0	1	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0017	2775	3	2	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0018	2782	3	0	1	2	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0019	2776	3	0	0	2	1	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0020	2777	2	2	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0021	2780	2	0	2	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0022	2777	2	0	1	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0023	2776	2	0	2	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0024	2777	2	0	1	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0025	2774	2	1	0	0	1	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0026	2777	2	2	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0027	2776	2	0	0	2	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0028	2773	2	0	0	2	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0029	2774	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0030	2773	1	0	0	0	0	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0031	2777	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0032	2782	1	0	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0033	2782	1	0	0	0	0	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0034	2781	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0035	2780	1	0	0	0	0	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0036	2781	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0037	2780	1	0	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0038	2777	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0039	2779	1	0	0	0	0	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0040	2779	1	0	0	0	0	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0041	2778	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0042	2776	1	0	0	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0043	2776	1	0	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0044	2777	1	0	0	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0045	2777	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0046	2776	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0047	2778	1	0	0	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0048	2776	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0049	2772	1	0	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0050	2773	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0051	2774	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0052	2781	1	0	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0053	2780	1	0	0	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0054	2781	1	0	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0055	2780	1	0	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0056	2777	1	0	0	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0057	2778	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578