JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCSK2_chr20_17222040_17489578	0/0	t0058	2776	1	0	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0059	2774	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0060	2775	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0061	2775	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0062	2773	1	0	0	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	t0063	2774	1	0	0	0	0	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK4_chr19_1476428_1495350	1/1	t0001	336	205	18	57	94	5	29	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	t0002	336	104	5	18	62	6	13	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	t0003	336	58	42	4	10	1	1	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	t0004	336	19	19	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	t0005	336	8	7	1	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	t0006	336	3	0	0	2	0	1	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	t0007	336	2	2	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	t0008	336	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK5_chr9_75885673_76367975	0/0	t0001	4563	16	7	5	1	0	3	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/1	t0002	4563	15	2	7	0	3	2	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0003	4563	11	1	6	3	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0004	4563	9	9	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0005	4563	7	2	0	4	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	1/0	t0006	4563	7	2	0	0	0	4	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0007	4563	6	0	2	2	1	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0008	4563	5	2	1	1	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0009	4563	5	2	3	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0010	4563	5	3	1	0	1	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0011	4586	5	0	3	0	1	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0012	4563	4	2	2	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0013	4563	4	4	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0014	4563	3	3	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0015	4563	3	3	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0016	4563	3	1	1	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0017	4563	3	3	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0018	4563	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0019	4563	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0020	4563	2	1	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0021	4563	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0022	4563	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0023	4563	2	1	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0024	4563	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0025	4586	2	0	1	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0026	4586	2	0	0	2	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0027	4563	2	0	1	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0028	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0029	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0030	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0031	4586	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0032	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0033	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0034	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0035	4563	1	0	0	1	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0036	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975