JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCSK5_chr9_75885673_76367975	0/0	t0037	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0038	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0039	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0040	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0041	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0042	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0043	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0044	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0045	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0046	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0047	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0048	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0049	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0050	4586	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0051	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0052	4563	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0053	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0054	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0055	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0056	4563	1	0	0	1	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0057	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0058	4563	1	0	0	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0059	4563	1	0	0	1	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0060	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0061	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	t0062	4563	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK6_chr15_101298933_101494707	1/0	t0001	1363	210	46	42	84	8	29	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/1	t0002	1363	62	20	11	17	3	10	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0003	1363	18	12	6	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0004	1363	18	1	2	15	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0005	1363	9	7	2	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0006	1363	4	0	2	0	1	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0007	1363	3	0	1	0	0	2	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0008	1363	2	0	0	0	0	2	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0009	1363	2	2	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0010	1363	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0011	1363	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0012	1363	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0013	1363	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0014	1363	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0015	1363	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0016	1363	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	t0017	1363	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK7_chr11_117199337_117237073	1/1	t0001	1840	191	31	49	80	12	17	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0002	1841	132	22	16	81	1	12	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0003	1841	39	0	4	26	1	8	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0004	1840	21	12	5	4	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0005	1838	20	0	3	4	3	10	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0006	1841	15	14	1	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0007	1842	12	6	0	6	0	0	copy fasta	PCSK7	chr11	117199337	117237073