JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCSK7_chr11_117199337_117237073	0/0	t0008	1839	6	0	3	3	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0009	1840	3	0	0	3	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0010	1841	3	0	1	2	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0011	1840	2	2	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0012	1840	2	2	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0013	1840	1	0	0	0	0	1	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0014	1840	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0015	1841	1	0	0	0	0	1	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0016	1841	1	0	1	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0017	1840	1	0	1	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0018	1841	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0019	1839	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0020	1841	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0021	1842	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0022	1841	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0023	1839	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0024	1838	1	0	0	0	0	1	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0025	1841	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	t0026	1840	1	0	0	0	1	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK9_chr1_55034548_55069852	0/1	t0001	1559	262	39	48	127	12	35	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	1/0	t0002	1559	58	29	8	12	3	5	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0003	1559	30	0	6	18	1	5	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0004	1558	11	5	1	4	1	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0005	1559	7	0	3	3	1	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0006	1559	6	6	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0007	1559	6	6	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0008	1559	5	0	0	5	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0009	1559	4	3	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0010	1559	2	2	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0011	1558	2	0	0	2	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0012	1559	2	1	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0013	1559	1	0	0	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0014	1559	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0015	1559	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0016	1559	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0017	1559	1	0	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0018	1559	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0019	1559	1	0	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0020	1559	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0021	1559	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0022	1559	1	0	0	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0023	1559	1	0	0	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0024	1559	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	t0025	1558	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCTP_chr17_55746051_55782374	0/0	t0001	1328	131	66	20	35	5	5	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	t0002	1328	129	5	25	81	3	15	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	t0003	1328	20	15	1	0	0	4	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	t0004	1328	1	1	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	t0005	1328	1	1	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	t0006	1328	1	1	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374