JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCTP_chr17_55746051_55782374	0/0	t0007	1328	1	1	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	t0008	1328	1	0	0	1	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	t0009	1328	1	0	0	1	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	t0010	1328	1	1	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	t0011	1328	1	1	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCYOX1L_chr5_149353046_149374653	0/0	t0001	1023	166	46	28	61	10	21	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	1/1	t0002	1023	164	21	35	82	5	19	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	t0003	1023	26	8	2	13	1	2	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	t0004	1023	9	7	2	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	t0005	1023	3	3	0	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	t0006	1023	1	0	1	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	t0007	1023	1	0	0	1	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	t0008	1023	1	0	0	1	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	t0009	1023	1	1	0	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1_chr2_70253137_70286185	0/1	t0001	3819	115	3	22	63	4	22	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	1/0	t0002	3822	98	16	15	52	3	11	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0003	3823	45	0	7	35	1	2	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0004	3822	41	1	20	18	0	2	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0005	3822	26	24	2	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0006	3822	14	5	4	0	0	5	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0007	3823	10	10	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0008	3822	7	6	1	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0009	3819	6	0	0	6	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0010	3822	5	5	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0011	3825	4	4	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0012	3822	4	4	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0013	3823	4	0	0	4	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0014	3822	4	0	0	4	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0015	3819	3	1	1	0	0	1	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0016	3822	3	3	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0017	3822	3	1	0	0	0	2	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0018	3819	3	0	0	3	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0019	3823	2	0	0	2	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0020	3823	2	0	0	2	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0021	3823	2	2	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0022	3822	2	0	2	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0023	3819	2	0	0	0	0	2	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0024	3823	2	2	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0025	3822	2	0	0	2	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0026	3822	1	1	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0027	3823	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0028	3835	1	1	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0029	3823	1	1	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0030	3822	1	1	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0031	3808	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0032	3822	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0033	3822	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0034	3822	1	1	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0035	3822	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0036	3822	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185