JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCYOX1_chr2_70253137_70286185	0/0	t0037	3788	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0038	3819	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0039	3819	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	t0040	3822	1	0	0	0	0	1	copy fasta	PCYOX1	chr2	70253137	70286185
PCYT1A_chr3_196229368_196292726	0/0	t0001	4443	75	4	13	45	4	9	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/1	t0002	4443	33	1	2	19	2	8	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0003	4443	26	5	5	9	2	5	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0004	4443	25	21	3	0	1	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	1/0	t0005	4443	23	5	10	1	2	4	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0006	4444	12	2	6	0	1	3	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0007	4443	9	8	1	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0008	4446	9	0	0	7	0	2	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0009	4446	7	1	3	0	3	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0010	4443	5	4	1	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0011	4443	5	5	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0012	4443	5	0	4	0	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0013	4446	4	4	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0014	4443	4	0	4	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0015	4446	4	4	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0016	4445	4	4	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0017	4443	3	0	2	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0018	4446	3	3	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0019	4443	3	0	0	3	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0020	4443	2	0	0	2	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0021	4446	2	0	0	1	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0022	4443	2	1	1	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0023	4443	2	0	0	2	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0024	4443	2	0	2	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0025	4443	2	2	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0026	4445	2	1	1	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0027	4445	2	2	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0028	4446	2	2	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0029	4443	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0030	4445	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0031	4443	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0032	4445	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0033	4443	1	0	0	0	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0034	4446	1	0	0	0	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0035	4445	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0036	4445	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0037	4445	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0038	4443	1	0	0	0	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0039	4443	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0040	4443	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0041	4446	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0042	4445	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0043	4446	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0044	4443	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0045	4443	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0046	4443	1	0	0	0	1	0	copy fasta	PCYT1A	chr3	196229368	196292726