JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCYT1A_chr3_196229368_196292726	0/0	t0047	4443	1	0	0	1	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0048	4443	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0049	4443	1	0	0	0	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0050	4443	1	0	0	0	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0051	4443	1	0	0	0	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0052	4447	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0053	4446	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0054	4444	1	0	1	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0055	4444	1	0	0	0	0	1	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0056	4444	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0057	4444	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0058	4444	1	0	1	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0059	4446	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0060	4446	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1A_chr3_196229368_196292726	0/0	t0061	4443	1	1	0	0	0	0	copy fasta	PCYT1A	chr3	196229368	196292726
PCYT1B_chrX_24553087_24652347	0/0	t0001	4457	50	3	15	24	4	4	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0002	4457	14	0	2	9	1	2	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0003	4448	9	7	2	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0004	4456	9	0	0	7	0	2	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0005	4448	9	0	0	7	0	2	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0006	4451	8	8	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0007	4453	6	0	4	0	2	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0008	4449	5	1	2	2	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0009	4458	5	2	0	3	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0010	4456	5	0	0	5	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0011	4458	4	0	0	4	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0012	4451	4	0	0	4	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0013	4456	4	0	0	4	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/1	t0014	4453	4	0	2	0	1	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0015	4456	4	2	2	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0016	4451	4	4	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0017	4458	3	0	1	2	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0018	4452	3	0	0	1	0	2	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0019	4457	3	3	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0020	4456	3	0	0	0	2	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0021	4456	3	3	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0022	4457	3	0	1	2	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0023	4448	3	0	0	3	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0024	4457	2	0	0	2	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0025	4457	2	0	0	2	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0026	4458	2	0	0	2	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0027	4457	2	0	0	2	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0028	4454	2	0	1	1	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0029	4449	2	2	0	0	0	0	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0030	4458	2	0	0	1	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0031	4453	2	0	0	0	1	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0032	4449	2	0	0	0	0	2	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0033	4451	2	0	1	0	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0034	4448	2	0	1	0	0	1	copy fasta	PCYT1B	chrX	24553087	24652347
PCYT1B_chrX_24553087_24652347	0/0	t0035	4457	2	0	0	2	0	0	copy fasta	PCYT1B	chrX	24553087	24652347